GT625962

EST Overview


Name	GT625962
Unique Name	GT625962
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	432

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
KEGG analysis for Lens culinaris unigene v1	2011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT625962 vs. TrEMBL
Match: Q2HTF4_MEDTR (Like-Sm ribonucleoprotein-related, core OS=Medicago truncatula GN=MtrDRAFT_AC150442g9v2 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.994e-37
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRSI 289
            MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN+IGMVVIRGNSVVTVEALEPVNRSI
Sbjct:    1 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRSI 80

[Close]

BLAST of GT625962 vs. TrEMBL
Match: C6SVH9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.375e-36
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNGNEKN+IGMVVIRGNSVVTVEALEPVNR+
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRT 79

[Close]

BLAST of GT625962 vs. TrEMBL
Match: C6T1E6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.643e-35
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLN NRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN+IGMVVIRGNSVVTVEALEPVNR+
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNGNRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRA 79

[Close]

BLAST of GT625962 vs. TrEMBL
Match: D6BQM7_9ROSI (Putative small nuclear ribonucleoprotein polypeptide G/SNRNP-G OS=Jatropha curcas PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.243e-35
Identity = 73/79 (92.41%), Postives = 79/79 (100.00%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNG+EKN+IGMVVIRGNSVVTVEALEPVN++
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKNDIGMVVIRGNSVVTVEALEPVNKT 79

[Close]

BLAST of GT625962 vs. TrEMBL
Match: B9HBY7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_717040 PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.391e-34
Identity = 73/79 (92.41%), Postives = 78/79 (98.73%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNG+EK +IGMVVIRGNSVVTVEALEPVNR+
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMVVIRGNSVVTVEALEPVNRA 79

[Close]

BLAST of GT625962 vs. TrEMBL
Match: D7TJ87_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033867001 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.816e-34
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNR 283
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNGNEK +IGMVVIRGNSVVTVEALEPV+R
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVSR 78

[Close]

BLAST of GT625962 vs. TrEMBL
Match: B9SWG3_RICCO (Small nuclear ribonucleoprotein G, putative OS=Ricinus communis GN=RCOM_0293010 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.816e-34
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNR 283
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNG+EK +IGMVVIRGNSVVTVEALEPVNR
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMVVIRGNSVVTVEALEPVNR 78

[Close]

BLAST of GT625962 vs. TrEMBL
Match: A9PB05_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.372e-34
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNG+EK +IGMVV+RGNSVVTVEALEPVNR+
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMVVLRGNSVVTVEALEPVNRA 79

[Close]

BLAST of GT625962 vs. TrEMBL
Match: D7LG40_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_900880 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.903e-34
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+ GTLRGFDQFMNLVVDNTVEVNGN+K +IGMVVIRGNS+VTVEALEPV RS
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 79

[Close]

BLAST of GT625962 vs. TrEMBL
Match: Q9CAX7_ARATH (Putative small nuclear ribonucleoprotein polypeptide G OS=Arabidopsis thaliana GN=At3g11500/F24K9.17 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.015e-34
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNG++K +IGMVVIRGNS+VTVEALEPV RS
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMVVIRGNSIVTVEALEPVGRS 79

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.631e-35
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+ GTLRGFDQFMNLVVDNTVEVNGN+K +IGMVVIRGNS+VTVEALEPV RS
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 79

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.992e-33
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPV 277
            MS SGQPP LKKYMDKQLQI L ANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN+IGMVVIRGNSVVTVEALEPV
Sbjct:    1 MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SmG PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.223e-19
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 2

Query:   68 PPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTV-EVNGNEKNEIGMVVIRGNSVVTVEALEPV 277
            PP++KKYMDK++ +KLN  R + G LRGFD FMN+V+D+TV E   N KN IGMVVIRGNS+V VEAL+ V
Sbjct:    6 PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_MOUSE (Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.880e-18
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 2

Query:   68 PPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV-NGNEKNEIGMVVIRGNSVVTVEALEPV 277
            PP+LKK+MDK+L +KLN  R + G LRGFD FMNLV+D  VE+    ++N IGMVVIRGNS++ +EALE V
Sbjct:    6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.880e-18
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 2

Query:   68 PPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV-NGNEKNEIGMVVIRGNSVVTVEALEPV 277
            PP+LKK+MDK+L +KLN  R + G LRGFD FMNLV+D  VE+    ++N IGMVVIRGNS++ +EALE V
Sbjct:    6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.880e-18
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 2

Query:   68 PPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV-NGNEKNEIGMVVIRGNSVVTVEALEPV 277
            PP+LKK+MDK+L +KLN  R + G LRGFD FMNLV+D  VE+    ++N IGMVVIRGNS++ +EALE V
Sbjct:    6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXGL_HUMAN (Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 8.410e-16
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 2

Query:   68 PPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV--NGNEKNEIGMVVIRGNSVVTVEALEPV 277
            PP+LKK+ DK+  +KLN  R + G LRGFD FMNLV+D  VE+  +G +KN IGMV IRGNS++ +EALE V
Sbjct:    6 PPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IGMVEIRGNSIIMLEALERV 76

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_CAEEL (Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans GN=snr-7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.098e-15
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2

Query:   68 PPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV--NGNEKNEIGMVVIRGNSVVTVEALEPVN 280
            PP+LKKYMDK++ +KLN NR + G LRGFD FMN+V+D  VE   +G   N +GM VIRGNSVV +E  E ++
Sbjct:    6 PPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVN-LGMTVIRGNSVVIMEPKERIS 77

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_DICDI (Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum GN=snrpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.874e-15
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 2

Query:   71 PDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVE-VNGNEKNEIGMVVIRGNSVVTVEALE 271
            PDL K +DK+L IKLN NR + G LRGFD FMN+ + +TVE V+  EK EIGMV+IRGNS++ +E LE
Sbjct:    9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSILLMEPLE 76

[Close]

BLAST of GT625962 vs. SwissProt
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.872e-14
Identity = 38/76 (50.00%), Postives = 60/76 (78.95%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVE--VNGNEKNEIGMVVIRGNSVVTVEALE 271
            MS++G P DLKKY+D+Q+ ++LN +R + G LRG+D F+N+V+++++E  V+G EK +IG V IRGNSV+ +E L+
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLD 74

[Close]

BLAST of GT625962 vs. TAIR peptide
Match: AT2G23930.1 (| Symbols: SNRNP-G | probable small nuclear ribonucleoprotein G | chr2:10182353-10183026 FORWARD LENGTH=80)

HSP 1 Score: 146.747 bits (369), Expect = 4.445e-36
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+ GTLRGFDQFMNLVVDNTVEVNGN+K +IGMVVIRGNS+VTVEALEPV RS
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 79

[Close]

BLAST of GT625962 vs. TAIR peptide
Match: AT3G11500.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr3:3621626-3622474 REVERSE LENGTH=79)

HSP 1 Score: 146.362 bits (368), Expect = 5.805e-36
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 2

Query:   50 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MSRSGQPPDLKKYMDK+LQIKLNANRM+VGTLRGFDQFMNLVVDNTVEVNG++K +IGMVVIRGNS+VTVEALEPV RS
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMVVIRGNSIVTVEALEPVGRS 79

[Close]

BLAST of GT625962 vs. TAIR peptide
Match: AT2G23930.2 (| Symbols: SNRNP-G | probable small nuclear ribonucleoprotein G | chr2:10182496-10183026 FORWARD LENGTH=67)

HSP 1 Score: 119.783 bits (299), Expect = 5.818e-28
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 2

Query:   89 MDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRS 286
            MDK+LQIKLNANRM+ GTLRGFDQFMNLVVDNTVEVNGN+K +IGMVVIRGNS+VTVEALEPV RS
Sbjct:    1 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 66

[Close]

BLAST of GT625962 vs. TAIR peptide
Match: AT2G03870.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99)

HSP 1 Score: 57.3806 bits (137), Expect = 3.546e-9
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 2

Query:   74 DLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV---------NGNEKNEIGMVVIRGNSVVTV 259
            DL K++DK +Q+KL   R + GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Sbjct:   10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80

[Close]

BLAST of GT625962 vs. TAIR peptide
Match: AT2G03870.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99)

HSP 1 Score: 57.3806 bits (137), Expect = 3.546e-9
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 2

Query:   74 DLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEV---------NGNEKNEIGMVVIRGNSVVTV 259
            DL K++DK +Q+KL   R + GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Sbjct:   10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80

The following BLAST results are available for this feature:

BLAST of GT625962 vs. TrEMBL
BLAST of GT625962 vs. SwissProt
BLAST of GT625962 vs. TAIR peptide

BLAST of GT625962 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q2HTF4_MEDTR	2.994e-37	98.75	Like-Sm ribonucleoprotein-related, core OS=Medicag...	[more]
C6SVH9_SOYBN	7.375e-36	94.94	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T1E6_SOYBN	1.643e-35	94.94	Putative uncharacterized protein OS=Glycine max PE...	[more]
D6BQM7_9ROSI	6.243e-35	92.41	Putative small nuclear ribonucleoprotein polypepti...	[more]
B9HBY7_POPTR	1.391e-34	92.41	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TJ87_VITVI	1.816e-34	93.59	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9SWG3_RICCO	1.816e-34	93.59	Small nuclear ribonucleoprotein G, putative OS=Ric...	[more]
A9PB05_POPTR	2.372e-34	91.14	Putative uncharacterized protein OS=Populus tricho...	[more]
D7LG40_ARALY	6.903e-34	89.87	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9CAX7_ARATH	9.015e-34	89.87	Putative small nuclear ribonucleoprotein polypepti...	[more]

BLAST of GT625962 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RUXG_ARATH	3.631e-35	89.87	Probable small nuclear ribonucleoprotein G OS=Arab...	[more]
RUXG_MEDSA	1.992e-33	93.42	Probable small nuclear ribonucleoprotein G OS=Medi...	[more]
RUXG_DROME	6.223e-19	63.38	Probable small nuclear ribonucleoprotein G OS=Dros...	[more]
RUXG_MOUSE	6.880e-18	60.56	Small nuclear ribonucleoprotein G OS=Mus musculus ...	[more]
RUXG_HUMAN	6.880e-18	60.56	Small nuclear ribonucleoprotein G OS=Homo sapiens ...	[more]
RUXG_BOVIN	6.880e-18	60.56	Small nuclear ribonucleoprotein G OS=Bos taurus GN...	[more]
RUXGL_HUMAN	8.410e-16	58.33	Small nuclear ribonucleoprotein G-like protein OS=...	[more]
RUXG_CAEEL	1.098e-15	56.16	Probable small nuclear ribonucleoprotein G OS=Caen...	[more]
RUXG_DICDI	1.874e-15	60.29	Probable small nuclear ribonucleoprotein G OS=Dict...	[more]
RUXG_SCHPO	7.872e-14	50.00	Probable small nuclear ribonucleoprotein G OS=Schi...	[more]

BLAST of GT625962 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G23930.1	4.445e-36	89.87	\| Symbols: SNRNP-G \| probable small nuclear ribonu...	[more]
AT3G11500.1	5.805e-36	89.87	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT2G23930.2	5.818e-28	87.88	\| Symbols: SNRNP-G \| probable small nuclear ribonu...	[more]
AT2G03870.1	3.546e-9	38.03	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT2G03870.2	3.546e-9	38.03	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	Like-Sm ribonucleoprotein (LSM) domain	PFAM	PF01423	LSM	coord: 14..76 score: 3.6
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	SMART	SM00651	no description	coord: 13..77 score: 7
IPR010920	Like-Sm ribonucleoprotein (LSM)-related domain	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 6..82 score: 8.2
None	No IPR available	GENE3D	2.30.30.100	no description	coord: 11..81 score: 7.2
None	No IPR available	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 6..84 score: 1.1
None	No IPR available	PANTHER	PTHR10553:SF2	SMALL NUCLEAR RIBONUCLEOPROTEIN G (SNRNP-G)	coord: 6..84 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 19..32 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT625962 ID=GT625962; Name=GT625962; organism=Lens culinaris; type=EST; length=432bp
CTTCAAATCATCGTCTTCCTTCTACGTCATCTGATCTCCACTCTTCACCA
TGAGCAGGTCAGGCCAGCCACCGGATTTGAAGAAATACATGGACAAACAG
CTTCAAATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGG
CTTTGACCAGTTTATGAATTTGGTTGTTGACAATACTGTGGAGGTGAATG
GCAATGAGAAAAATGAGATAGGGATGGTGGTAATCAGAGGAAATAGTGTG
GTAACTGTAGAGGCACTTGAACCAGTAAACAGGAGCATTTGATTTATGTT
TCTTGTAAACATTTATAAGTAAATTGTAAGGTTTTAAAGTTTCAACAGAT
ACCGGTTACTGCTGGGAGTAAATGTAATTAGGAATCTTGATATTGTCATG
CTAGCGGCTAATGTGATAGTATGTTTCTGGTT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR010920	LSM_dom_sf

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