GT624970

EST Overview
NameGT624970
Unique NameGT624970
TypeEST
OrganismLens culinaris (lentil)
Sequence length427
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624970 vs. TrEMBL
Match: C6SZW9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.278e-11
Identity = 41/77 (53.25%), Postives = 44/77 (57.14%), Query Frame = 3
Query:   27 SDKVPPSFDRANAGSQGFNPXXXXXXXXXXXXXTFLIGNFVLYTYAQXXXXXXXXXXXXXXXXXXERLKQGVSAPGE 257
            +DKVPPSFDRA  GS+GFNP             TFLIGN+VLYTYAQ                  ERLKQGVSAPGE
Sbjct:    8 ADKVPPSFDRA--GSKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 82          
BLAST of GT624970 vs. TrEMBL
Match: C6T1F6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.082e-10
Identity = 39/77 (50.65%), Postives = 42/77 (54.55%), Query Frame = 3
Query:   27 SDKVPPSFDRANAGSQGFNPXXXXXXXXXXXXXTFLIGNFVLYTYAQXXXXXXXXXXXXXXXXXXERLKQGVSAPGE 257
            SDKVPPSFDR   GS+GFNP              FL+GN+VLYTYAQ                  ERLKQGVSAPGE
Sbjct:    8 SDKVPPSFDRV--GSKGFNPALIVLLLVGGLLLIFLVGNYVLYTYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 82          
BLAST of GT624970 vs. TrEMBL
Match: C6SX22_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.413e-10
Identity = 39/82 (47.56%), Postives = 45/82 (54.88%), Query Frame = 3
Query:   27 SDKVPPSFDRA-----NAGSQGFNPXXXXXXXXXXXXXTFLIGNFVLYTYAQXXXXXXXXXXXXXXXXXXERLKQGVSAPGE 257
            +DKVPPSFDR      ++GS+GFNP             TFLIGN+VLY+YAQ                  ERLKQGVSAPGE
Sbjct:    8 ADKVPPSFDRVGNVIKDSGSKGFNPGLIVLLVVGGLLLTFLIGNYVLYSYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89          
BLAST of GT624970 vs. TrEMBL
Match: C6SX03_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.411e-10
Identity = 39/82 (47.56%), Postives = 44/82 (53.66%), Query Frame = 3
Query:   27 SDKVPPSFDRA-----NAGSQGFNPXXXXXXXXXXXXXTFLIGNFVLYTYAQXXXXXXXXXXXXXXXXXXERLKQGVSAPGE 257
            +DKVPPSFDR      ++GS+ FNP             TFLIGN+VLYTYAQ                  ERLKQGVSAPGE
Sbjct:    8 ADKVPPSFDRVGNVIKDSGSKAFNPGLIVLLVVGGLLLTFLIGNYVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89          
BLAST of GT624970 vs. TrEMBL
Match: D7TQI4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025648001 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.849e-8
Identity = 35/82 (42.68%), Postives = 42/82 (51.22%), Query Frame = 3
Query:   27 SDKVPPSFDRA-----NAGSQGFNPXXXXXXXXXXXXXTFLIGNFVLYTYAQXXXXXXXXXXXXXXXXXXERLKQGVSAPGE 257
            ++KVPPSFDR      +A ++GFNP              FL+GNF+LY YAQ                  ERLKQGVSAPGE
Sbjct:    8 AEKVPPSFDRMENMVKDAEAKGFNPGLIVLLLVVGVLLVFLVGNFLLYMYAQKTLPRMKKKPVSKKKMKRERLKQGVSAPGE 89          
BLAST of GT624970 vs. TrEMBL
Match: D7SKV6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025155001 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.566e-8
Identity = 34/82 (41.46%), Postives = 41/82 (50.00%), Query Frame = 3
Query:   27 SDKVPPSFDRA-----NAGSQGFNPXXXXXXXXXXXXXTFLIGNFVLYTYAQXXXXXXXXXXXXXXXXXXERLKQGVSAPGE 257
            +DKVPPSF+R      +A ++GFNP              FL+GN+ LY YAQ                  ERLKQGVSAPGE
Sbjct:    8 ADKVPPSFERMGNVIKDADAKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89          
BLAST of GT624970 vs. TrEMBL
Match: A9P8W5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_576667 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 9.481e-7
Identity = 34/82 (41.46%), Postives = 39/82 (47.56%), Query Frame = 3
Query:   27 SDKVPPSFDRA-----NAGSQGFNPXXXXXXXXXXXXXTFLIGNFVLYTYAQXXXXXXXXXXXXXXXXXXERLKQGVSAPGE 257
            SD+ PPSF        +A  +G NP             +FL+GNFVLYTYAQ                  ERLKQGVSAPGE
Sbjct:    8 SDQSPPSFQNMGNVIKDAEPKGLNPGLIVLLVIGGLLMSFLVGNFVLYTYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 89          
The following BLAST results are available for this feature:
BLAST of GT624970 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 7
Match NameE-valueIdentityDescription
C6SZW9_SOYBN1.278e-1153.25Putative uncharacterized protein OS=Glycine max PE... [more]
C6T1F6_SOYBN1.082e-1050.65Putative uncharacterized protein OS=Glycine max PE... [more]
C6SX22_SOYBN1.413e-1047.56Putative uncharacterized protein OS=Glycine max PE... [more]
C6SX03_SOYBN2.411e-1047.56Putative uncharacterized protein OS=Glycine max PE... [more]
D7TQI4_VITVI3.849e-842.68Whole genome shotgun sequence of line PN40024, sca... [more]
D7SKV6_VITVI6.566e-841.46Whole genome shotgun sequence of line PN40024, sca... [more]
A9P8W5_POPTR9.481e-741.46Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006779DNA binding protein S1FAPFAMPF04689S1FAcoord: 20..85
score: 3.3
NoneNo IPR availableSEGsegsegcoord: 29..41
score: NAcoord: 56..73
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624970 ID=GT624970; Name=GT624970; organism=Lens culinaris; type=EST; length=427bp
ATCATATCTTCTCCGCGTCAGCCATGTCCGATAAGGTTCCCCCTTCATTC
GATCGCGCGAATGCTGGATCTCAAGGGTTCAACCCAGGCTTAATAGTTCT
ACTTGTTGTTGGTGGGTTGCTATTGACATTCCTCATTGGAAATTTTGTGC
TCTACACTTATGCACAGAAGACCATTCCTCCTAGGAAAAAGAAGCCAATC
TCAAAAAAGAAGATGAAAAAGGAGAGACTGAAGCAAGGTGTCTCTGCACC
TGGAGAGTAGAGGCAATGGACTCGAATGCTCTATGTAATGTGGATTACCT
TGTACTGTTATAAACAAATCTCAGTTCTGTGATGTCTTGTTAATTTTCAT
GTTTCCATCCTGTGTGTTTACTGACAGAAACCTTAGCTACATCAATTAGT
ACTCTTAGCAATATATTTGGGACTGAC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0045449regulation of transcription
Vocabulary: INTERPRO
TermDefinition
IPR006779S1FA_DNA-bd