GT626305

EST Overview
NameGT626305
Unique NameGT626305
TypeEST
OrganismLens culinaris (lentil)
Sequence length678
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT626305 vs. TrEMBL
Match: B9RIZ1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1752370 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.606e-22
Identity = 66/138 (47.83%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    5 SLLQESETSKGSLIAPGLFRGLVPSASTVCXXXXXXXXXXXXXXXXXXXXXMETPARRHHLIPKEVLVPLSMKSPS-YSNFLAANKPAQDRNLHSITGDCSGASKSTSFDL--PEGRVHGGDLMLFFGGNLKNALDGI 409
            S++ E  ++KGSLI PGLF+GLV +AS                        +  P +R HLIP +VLVP SMKS S YS+FL A K  + RN +S        S+ TSFD   PEGRVHGG LM  FGGNLKNA+DGI
Sbjct:  511 SMVLEQGSNKGSLIGPGLFQGLVSAASNAGSSIDNNYSSSGISAVSDCTDSLGKPTKRQHLIPAQVLVPPSMKSSSSYSSFLNAEKQEEGRNEYS--AGAGSTSRVTSFDYMAPEGRVHGGGLMSLFGGNLKNAIDGI 646          
BLAST of GT626305 vs. TrEMBL
Match: B9GZS4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_712220 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.811e-18
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 2
Query:    5 SLLQESETSKGSLIAPGLFRGLVPSASTVCXXXXXXXXXXXXXXXXXXXXXMETPARRHHLIPKEVLVPLSMKSPS-YSNFLAANKPAQDRNLHSITGDCSGASKSTSFDLPEGRVHGGDLMLFFGGNLKNALDGI 409
            S++QE E ++  LI PGLF GLV +AST                       +E PA+R HLIP +VLVP SMK+ S +++F+ A+   +  N +  T   SG  K+  + +PEGRVHGG LM  FGGNL+NA++ +
Sbjct:  510 SMVQEREANRTGLIRPGLFHGLVSAASTAGSSIDNNHSYSGVSAVSDCSDSLEKPAKRLHLIPPQVLVPHSMKATSSFTSFMNADNLEEGTNGYGAT---SGGKKNFDYLVPEGRVHGGGLMSLFGGNLRNAINEV 642          
BLAST of GT626305 vs. TrEMBL
Match: B9GF89_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_640805 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.811e-18
Identity = 56/136 (41.18%), Postives = 75/136 (55.15%), Query Frame = 2
Query:    5 SLLQESETSKGSLIAPGLFRGLVPSASTVCXXXXXXXXXXXXXXXXXXXXXMETPARRHHLIPKEVLVPLSMK-SPSYSNFLAANKPAQDRNLHSITGDCSGASKSTSFDLPEGRVHGGDLMLFFGGNLKNALDGI 409
            S++QE + +K  LI PGLF GLV ++S                        +E PA+R HLIP +VLVPLSMK S S + F+      +  N +   G  +G  K   + +PEGRVHGG LM  FGGNLKN++DG+
Sbjct:  510 SMVQERKANKTGLIGPGLFHGLVSASSVAGSSIDTNHSYSGVSAVSDSIDSLEKPAKRQHLIPAQVLVPLSMKVSSSCTGFMNTENLEEGTNGY---GASNGGIKGCDYLVPEGRVHGGALMSLFGGNLKNSIDGV 642          
BLAST of GT626305 vs. TrEMBL
Match: A5B6J0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015279 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.874e-15
Identity = 57/140 (40.71%), Postives = 76/140 (54.29%), Query Frame = 2
Query:    5 SLLQESETSKGSLIAPGLFRGLVPSASTVCXXXXXXXXXXXXXXXXXXXXXMETPARR--HHLIPKEVLVPLSMK-SPSYSNFLAANKPAQDRNLHSITG-DCSGASKSTSFD-----LPEGRVHGGDLMLFFGGNLKNA 397
            SL+QE ET KG +I PGLF GLVP+A++                       +E  ++R    LIP +VLVPLSMK S SYS  ++A +  +  +   I G + +  +   SF+     +PEGRVHGG LM   GGNLKNA
Sbjct:  510 SLVQERETKKGGMIGPGLFHGLVPTATSTGGSSFDNNSSSGVSVISDCINSLEKASKRRQQQLIPPQVLVPLSMKSSSSYSRLVSAERQEEASHGGGIGGSNSNNTAGGKSFNMMMMMIPEGRVHGGGLMSMLGGNLKNA 649          
BLAST of GT626305 vs. TrEMBL
Match: D7TR30_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_99.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00038733001 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.029e-14
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 2
Query:    5 SLLQESETSKGSLIAPGLFRGLVPSASTVCXXXXXXXXXXXXXXXXXXXXXMETPARR--HHLIPKEVLVPLSMKSPSYSNFLAANKPAQDRNLHSITGDCSGASKSTSFDLPEGRVHGGDLMLFFGGNLKNALDGI 409
            SL+QE ET KG +I PGLF GLVP+A++                       +E  ++R    LIP +VLVPLSMKS   S++ ++N  A  ++ + +              +PEGRVHGG LM   GGNLKNA + +
Sbjct:  339 SLVQERETKKGGMIGPGLFHGLVPTATSTGGSSFDNNSSSGVSVISDCINSLEKASKRRQQQLIPPQVLVPLSMKSS--SSYSSSNNTAGGKSFNMM-----------MMMIPEGRVHGGGLMSMLGGNLKNACNEV 462          
BLAST of GT626305 vs. TAIR peptide
Match: AT5G64550.1 (| Symbols: | loricrin-related | chr5:25801794-25803698 REVERSE LENGTH=634)

HSP 1 Score: 60.8474 bits (146), Expect = 7.576e-10
Identity = 51/148 (34.46%), Postives = 65/148 (43.92%), Query Frame = 2
Query:    5 SLLQESETSKGSLIAPGLFRGLVPS-------ASTVCXXXXXXXXXXXXXXXXXXXXXMETPARRHH-------LIPKEVLVPLSMKSPSYSNFLAANKPAQDRNLHSITGDCSGASKSTSFD--LPEGRVHGGDLMLFFGGNLKNAL 400
            S+ Q+   SK  LI PGLFRGLV +       A+T                          P   H        +IP +VLVP SMKS S+SN     +P  + N +S     SG++    FD  +PE RVHGG LM    GN+K  L
Sbjct:  494 SMSQDKAGSKVGLIGPGLFRGLVSTSLQTTTTATTTTTTTDHSQSGVSAVSDCMDSIDRPLPPLHHQPEKRQKLMIPMQVLVPPSMKSLSFSN---TERPDIETNNNS-----SGSNGRNIFDFMIPEERVHGGGLMSLLNGNMKQTL 633          
The following BLAST results are available for this feature:
BLAST of GT626305 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
B9RIZ1_RICCO4.606e-2247.83Putative uncharacterized protein OS=Ricinus commun... [more]
B9GZS4_POPTR1.811e-1841.18Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GF89_POPTR1.811e-1841.18Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5B6J0_VITVI1.874e-1540.71Putative uncharacterized protein OS=Vitis vinifera... [more]
D7TR30_VITVI6.029e-1437.96Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of GT626305 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G64550.17.576e-1034.46| Symbols: | loricrin-related | chr5:25801794-258... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 32..52
score
NoneNo IPR availableSEGsegsegcoord: 6..20
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT626305 ID=GT626305; Name=GT626305; organism=Lens culinaris; type=EST; length=678bp
CTGCAGCCTGTTGCAAGAAAGTGAAACTAGCAAGGGAAGTCTGATTGCAC
CCGGACTTTTCCGCGGTCTTGTACCTTCTGCTTCTACTGTCTGTAGCAGT
TTTGAGAACAACAATTCTTCCTCAGGCGTCAGTGTCGTGTCTGATTCCTA
CGATTCAATGGAAACACCTGCTAGAAGACATCACCTTATCCCCAAGGAGG
TGTTAGTTCCACTCTCAATGAAATCACCATCGTATTCAAACTTCTTGGCA
GCCAATAAGCCAGCACAAGACAGAAACCTCCACAGCATCACCGGAGATTG
CAGTGGTGCTTCGAAAAGCACCAGCTTTGATTTGCCGGAAGGCAGGGTCC
ACGGTGGCGACCTCATGTTGTTTTTCGGAGGAAATCTAAAAAACGCACTT
GATGGTATCTGAAGTGTGAGGGAGTAAATGATGACTCTCAAGTTGTATGT
AGATTTCACTTTAGGATATAGGGACCGTTCCATTCCTGTCATGGAATTGT
GTATAAGTGTTTGTACTGTATGTTAAGTAACTCAGTTATTATTGTTGTGT
GTTGTTGATAAGTTGATTATTAGCCATTAGGCTCTTATTGTTTGTAGTGT
TTTCTTCATTCTTAAATATTGTGTAAGGTGGCAATCTCAAACAATAAGCA
CATAAATCCACTGCCACAAACAGTCTCA
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