GT627386

EST Overview


Name	GT627386
Unique Name	GT627386
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	649

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

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BLAST of GT627386 vs. TrEMBL
Match: Q9FT01_CICAR (Putative splicing factor (Fragment) OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.014e-89
Identity = 165/217 (76.04%), Postives = 180/217 (82.95%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPM-NGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGF+QFAHLEHAKA+     K+       K SSV DHVG QDTTAKSADFDDDEGGL LNA SRALLMQ+L  + I  SIG+PM NG VP QQA SLPIGNPG++PA  LP Q MPT V EPVG PS CLLLKNMFDP+TETEPDFDLDIKEDVEEECSKYGRVKHIYVDK SAGFVYL FETVEA+SAAQRAMHMRWFAR++I+AI+MQP +YEA
Sbjct:  170 GFGFVQFAHLEHAKASSEFKWKIGDCWPNNKGSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADIPTSIGVPMVNGPVPVQQAFSLPIGNPGVIPAQVLPAQVMPTPVVEPVGVPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEASSAAQRAMHMRWFARRLITAIFMQPHLYEA 386

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BLAST of GT627386 vs. TrEMBL
Match: D7SWA2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022281001 PE=4 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.745e-84
Identity = 161/222 (72.52%), Postives = 188/222 (84.68%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLPM-NGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGF+QFA LEHAKAAQ+LNGKL+IAGR IKVSSV DH+G QD  AK+ADFDDD+GG L+LNAQSRALLMQKLDR+GIA+SI    G+PM NGS P QQAISL I     + A ALPTQ + +  +EPVGTP+ CLLLKNMFDP TE +PDFDLDIKE+V+EECS +GRVKHIYV+K+SAG+VYL FETVEAA  AQRAMHMRWFAR++ISAI++QP+ YEA
Sbjct:  277 GFGFVQFAELEHAKAAQNLNGKLDIAGRIIKVSSVTDHIGVQDAGAKAADFDDDDGGGLSLNAQSRALLMQKLDRTGIASSIAGSLGVPMLNGSAPNQQAISLSINGQAAVSAPALPTQVVTSPASEPVGTPTECLLLKNMFDPATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEKHSAGYVYLRFETVEAAVTAQRAMHMRWFARRLISAIFLQPRDYEA 498

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BLAST of GT627386 vs. TrEMBL
Match: A5AQI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002664 PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.520e-83
Identity = 158/218 (72.48%), Postives = 185/218 (84.86%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASIGLPM-NGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGF+QFA LEHAKAAQ+LNGKL+IAGR IKVSSV DH+G QD  AK+ADFDDD+GG L+LNAQSRALLMQKLDR+G   S+G+PM NGS P QQAISL I     + A ALPTQ + +  +EPVGTP+ CLLLKNMFDP TE +PDFDLDIKE+V+EECS +GRVKHIYV+K+SAG+VYL FETVEAA  AQRAMHMRWFAR++ISAI++QP+ YEA
Sbjct:  241 GFGFVQFAELEHAKAAQNLNGKLDIAGRIIKVSSVTDHIGVQDAGAKAADFDDDDGGGLSLNAQSRALLMQKLDRTG---SLGVPMLNGSAPNQQAISLSINGQAAVSAPALPTQVVTSPASEPVGTPTECLLLKNMFDPATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEKHSAGYVYLRFETVEAAVTAQRAMHMRWFARRLISAIFLQPRDYEA 455

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BLAST of GT627386 vs. TrEMBL
Match: B9H6Q0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_716366 PE=4 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.096e-78
Identity = 157/223 (70.40%), Postives = 180/223 (80.72%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQS-LNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLPM-NGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGF+QF  LE+AKAAQS LNGKLEIAGRTIKVSSV +H G QDT AKSADFDDD+GG LALNAQSRALLMQKLDR+GIA SI    G+P+ NGS   QQAISLPI     + A ALP   + +   EP+G PS CL+LKNMFDP TETEPDFDLDIKEDVEEECSKYG+V+HI+VDKNS G VYL F ++EAA+ AQRAMHMRWFAR++I A++M  + YEA
Sbjct:  139 GFGFVQFTQLENAKAAQSALNGKLEIAGRTIKVSSVTEHGGQQDTGAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVPLLNGSASNQQAISLPIIGQTAIGAAALPAPVLSSPAYEPIGQPSECLMLKNMFDPATETEPDFDLDIKEDVEEECSKYGQVEHIFVDKNSTGCVYLRFGSIEAAAGAQRAMHMRWFARRLILAVFMPTREYEA 361

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BLAST of GT627386 vs. TrEMBL
Match: D7M284_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_660826 PE=4 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.582e-77
Identity = 160/223 (71.75%), Postives = 177/223 (79.37%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLP-MNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGFIQFA LEH+KAAQ SLNGKLEIAGRTIKVSSV+DH+G QD   KSADFDDD+GG LALNAQSRALLMQKLDRSGIA SI    G+P +NG+     A + P  NP   P   LPT  +P+ V EPVG PS CLLLKNMFDP TETE DFD +I+EDV +ECSKYG V HIYVDKNSAGFVYL F++VEAA AAQRAMHMRWFA+KMISA +M P  YEA
Sbjct:  300 GFGFIQFAQLEHSKAAQISLNGKLEIAGRTIKVSSVSDHIGTQDAAPKSADFDDDDGGGLALNAQSRALLMQKLDRSGIATSIVGSLGVPGLNGA-----AFNQPGMNPSF-PTPVLPTTAIPSFVNEPVGQPSECLLLKNMFDPATETERDFDFEIREDVADECSKYGEVNHIYVDKNSAGFVYLRFQSVEAAVAAQRAMHMRWFAQKMISATFMPPHEYEA 516

[Close]

BLAST of GT627386 vs. TrEMBL
Match: B9HFS2_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_871345 PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.699e-77
Identity = 153/216 (70.83%), Postives = 176/216 (81.48%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQS-LNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSG----IAASIGLPM-NGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYM 628
            GFGF+QF  LE+AKAAQS LNGKLEIAGRTIKVSSV +H G QD+  KSADFDDD+GG LALNAQSRALLMQKLDR+G    IA S+G+P+ NGS P QQAISLP+     + A A P   +P+   E +G PS CLLLKNMFDP TETEPDFDLDIKEDVEEECS+YG+VKHI+VDKNSAG VYL F+++EAA+ AQRAMHMRWFAR+ I AI+M
Sbjct:  166 GFGFVQFTQLENAKAAQSALNGKLEIAGRTIKVSSVTEHGGQQDSGVKSADFDDDDGGGLALNAQSRALLMQKLDRTGTATSIAGSLGVPLLNGSAPNQQAISLPVNGQTNIGAAAFPALVLPSPAYESIGQPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSRYGQVKHIWVDKNSAGHVYLQFDSMEAAARAQRAMHMRWFARRSILAIFM 381

[Close]

BLAST of GT627386 vs. TrEMBL
Match: Q93Y25_ARATH (Splicing factor-like protein OS=Arabidopsis thaliana GN=At5g09880/ MYH9.9 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.285e-76
Identity = 156/223 (69.96%), Postives = 179/223 (80.27%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLP-MNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGFIQF  LEH+KAAQ +LNGKLEIAGRTIKVSSV+DH+G QD+  KSADFDDD+GG LALNAQSRA+LMQKLDRSGIA SI    G+P +NG+     A + P  NP   P   LPT  +P+ V E VG PS CLLLKNMFDP TETEP+FDL+I++DV +ECSKYG V HIYVDKNSAGFVYL F++VEAA+AAQRAMHMRWFA+KMISA +M P  YEA
Sbjct:  307 GFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGA-----AFNQPGMNPSF-PTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEA 523

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BLAST of GT627386 vs. TrEMBL
Match: Q84WH4_ARATH (Splicing factor-like protein OS=Arabidopsis thaliana GN=At5g09880 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.285e-76
Identity = 156/223 (69.96%), Postives = 179/223 (80.27%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLP-MNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGFIQF  LEH+KAAQ +LNGKLEIAGRTIKVSSV+DH+G QD+  KSADFDDD+GG LALNAQSRA+LMQKLDRSGIA SI    G+P +NG+     A + P  NP   P   LPT  +P+ V E VG PS CLLLKNMFDP TETEP+FDL+I++DV +ECSKYG V HIYVDKNSAGFVYL F++VEAA+AAQRAMHMRWFA+KMISA +M P  YEA
Sbjct:  307 GFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGA-----AFNQPGMNPSF-PTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEA 523

[Close]

BLAST of GT627386 vs. TrEMBL
Match: Q56XB8_ARATH (Splicing factor-like protein OS=Arabidopsis thaliana GN=At5g09880 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.285e-76
Identity = 156/223 (69.96%), Postives = 179/223 (80.27%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLP-MNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGFIQF  LEH+KAAQ +LNGKLEIAGRTIKVSSV+DH+G QD+  KSADFDDD+GG LALNAQSRA+LMQKLDRSGIA SI    G+P +NG+     A + P  NP   P   LPT  +P+ V E VG PS CLLLKNMFDP TETEP+FDL+I++DV +ECSKYG V HIYVDKNSAGFVYL F++VEAA+AAQRAMHMRWFA+KMISA +M P  YEA
Sbjct:   88 GFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGA-----AFNQPGMNPSF-PTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEA 304

[Close]

BLAST of GT627386 vs. TrEMBL
Match: C0Z393_ARATH (AT5G09880 protein OS=Arabidopsis thaliana GN=AT5G09880 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.285e-76
Identity = 156/223 (69.96%), Postives = 179/223 (80.27%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLP-MNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGFIQF  LEH+KAAQ +LNGKLEIAGRTIKVSSV+DH+G QD+  KSADFDDD+GG LALNAQSRA+LMQKLDRSGIA SI    G+P +NG+     A + P  NP   P   LPT  +P+ V E VG PS CLLLKNMFDP TETEP+FDL+I++DV +ECSKYG V HIYVDKNSAGFVYL F++VEAA+AAQRAMHMRWFA+KMISA +M P  YEA
Sbjct:  285 GFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGA-----AFNQPGMNPSF-PTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEA 501

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BLAST of GT627386 vs. SwissProt
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.547e-27
Identity = 91/224 (40.62%), Postives = 121/224 (54.02%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAA-QSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDE---GGLALNAQSRALLMQKL-DRSGI----AASIGLPMNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSA-GFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVY 643
            G+GFI F+  E AK A + LNG  E+AGR +KV  V +     D ++ S+  D DE    G+ L    R  LM +L + +G+    AA   L M+GS+       L         A AL          +P+ T   C  L NMF+P TE E  +D +IK+DV EEC+K+G V HIYVDKNSA G VY+   ++ AA AA  A+H RWFA KMI+A Y+    Y
Sbjct:  292 GYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAA----AASVQPLAT--QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 505

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BLAST of GT627386 vs. SwissProt
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.345e-27
Identity = 90/226 (39.82%), Postives = 122/226 (53.98%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAA-QSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDE---GGLALNAQSRALLMQKL-DRSGI----AASIGLPMNGSVP--AQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSA-GFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVY 643
            G+GFI F+  E AK A + LNG  E+AGR +KV  V +     D ++ S+  D DE    G+ L    R  LM +L + +G+    AA   L M+GS+   A    S  I     +      +        +P+ T   C  L NMF+P TE E  +D +IK+DV EEC+K+G V HIYVDKNSA G VY+   ++ AA AA  A+H RWFA KMI+A Y+    Y
Sbjct:  292 GYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLAT--QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511

[Close]

BLAST of GT627386 vs. SwissProt
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.345e-27
Identity = 90/226 (39.82%), Postives = 122/226 (53.98%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAA-QSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDE---GGLALNAQSRALLMQKL-DRSGI----AASIGLPMNGSVP--AQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSA-GFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVY 643
            G+GFI F+  E AK A + LNG  E+AGR +KV  V +     D ++ S+  D DE    G+ L    R  LM +L + +G+    AA   L M+GS+   A    S  I     +      +        +P+ T   C  L NMF+P TE E  +D +IK+DV EEC+K+G V HIYVDKNSA G VY+   ++ AA AA  A+H RWFA KMI+A Y+    Y
Sbjct:  292 GYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLAT--QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511

[Close]

BLAST of GT627386 vs. SwissProt
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.289e-18
Identity = 68/212 (32.08%), Postives = 103/212 (48.58%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAK-AAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPMNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQ---VAEPVGT-PSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECS-KYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISA 619
            GFG+IQ+ +   A+ A + +NG  ++AGR ++V    D    + T++    FD+      L  Q R+   Q+   S    S        +   +  S PI    LM  LA            V+EP     S C LL+NMF+P  ET P++  ++++DV+EEC  KYG+V HI V  N  G +++ FE  + A  A   +H RWF  + I A
Sbjct:  381 GFGYIQYRNPISARNALEKMNG-FDLAGRNMRVCLGNDKFTTETTSSMLKRFDE-----TLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEESRPITRDELMKKLARSEDISDNSSKLVSEPEPPIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKA 586

[Close]

BLAST of GT627386 vs. SwissProt
Match: MAN1_HUMAN (Inner nuclear membrane protein Man1 OS=Homo sapiens GN=LEMD3 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 1.075e-9
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 2

Query:  365 PVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNS-AGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVY 643
            P  + + CL ++NMFDP  E    + L I+E + E+CS    + HI VDKNS  G VY+   + E A  A +A+H  WF  K+++  Y++   Y
Sbjct:  778 PPNSLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYAGKAFKALHGSWFDGKLVTVKYLRLDRY 871

[Close]

BLAST of GT627386 vs. SwissProt
Match: MAN1_MOUSE (Inner nuclear membrane protein Man1 OS=Mus musculus GN=Lemd3 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 3.128e-9
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 2

Query:  365 PVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNS-AGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVY 643
            P  + + CL ++NMFDP  E    + L I+E + E+CS    + HI VD+NS  G VY+   + E A  A +A+H  WF  K+++  Y++   Y
Sbjct:  788 PPNSLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDRNSREGCVYVKCLSPEYAGKAFKALHGSWFDGKLVTVKYLRLDRY 881

[Close]

BLAST of GT627386 vs. TAIR peptide
Match: AT5G09880.1 (| Symbols: | Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527)

HSP 1 Score: 288.886 bits (738), Expect = 1.609e-78
Identity = 156/223 (69.96%), Postives = 179/223 (80.27%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGG-LALNAQSRALLMQKLDRSGIAASI----GLP-MNGSVPAQQAISLPIGNPGLMPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGFIQF  LEH+KAAQ +LNGKLEIAGRTIKVSSV+DH+G QD+  KSADFDDD+GG LALNAQSRA+LMQKLDRSGIA SI    G+P +NG+     A + P  NP   P   LPT  +P+ V E VG PS CLLLKNMFDP TETEP+FDL+I++DV +ECSKYG V HIYVDKNSAGFVYL F++VEAA+AAQRAMHMRWFA+KMISA +M P  YEA
Sbjct:  307 GFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGA-----AFNQPGMNPSF-PTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEA 523

[Close]

BLAST of GT627386 vs. TAIR peptide
Match: AT2G16940.2 (| Symbols: | Splicing factor, CC1-like | chr2:7342869-7347052 REVERSE LENGTH=610)

HSP 1 Score: 240.736 bits (613), Expect = 5.024e-64
Identity = 133/229 (58.08%), Postives = 159/229 (69.43%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHV----GGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLP----MNGSVPAQQAISLPIGNPGLMPALA--LPTQFMPTQVA---EPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGF+QFA LE A+ A +LNG+LEIAGR IKVS+V D       GQ  T    D DDD GGL+LNAQSRALLMQKLDRSG A+S GL      NG V    +++ P    G  PA+A    +  +P  +    +P+G PS CLLLKNMFDP+TETE DFD DIKEDV+EECSK+G++ HI+VDKNS GFVYL FE  +AA  AQRA+H RWFA KMI+A YM  + YEA
Sbjct:  375 GFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLD-DDDGGGLSLNAQSRALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEA 602

[Close]

BLAST of GT627386 vs. TAIR peptide
Match: AT2G16940.3 (| Symbols: | Splicing factor, CC1-like | chr2:7342869-7347052 REVERSE LENGTH=599)

HSP 1 Score: 240.736 bits (613), Expect = 5.024e-64
Identity = 133/229 (58.08%), Postives = 159/229 (69.43%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHV----GGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLP----MNGSVPAQQAISLPIGNPGLMPALA--LPTQFMPTQVA---EPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGF+QFA LE A+ A +LNG+LEIAGR IKVS+V D       GQ  T    D DDD GGL+LNAQSRALLMQKLDRSG A+S GL      NG V    +++ P    G  PA+A    +  +P  +    +P+G PS CLLLKNMFDP+TETE DFD DIKEDV+EECSK+G++ HI+VDKNS GFVYL FE  +AA  AQRA+H RWFA KMI+A YM  + YEA
Sbjct:  364 GFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLD-DDDGGGLSLNAQSRALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEA 591

[Close]

BLAST of GT627386 vs. TAIR peptide
Match: AT2G16940.1 (| Symbols: | Splicing factor, CC1-like | chr2:7342869-7347052 REVERSE LENGTH=561)

HSP 1 Score: 240.736 bits (613), Expect = 5.024e-64
Identity = 133/229 (58.08%), Postives = 159/229 (69.43%), Query Frame = 2

Query:    2 GFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHV----GGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLP----MNGSVPAQQAISLPIGNPGLMPALA--LPTQFMPTQVA---EPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEA 649
            GFGF+QFA LE A+ A +LNG+LEIAGR IKVS+V D       GQ  T    D DDD GGL+LNAQSRALLMQKLDRSG A+S GL      NG V    +++ P    G  PA+A    +  +P  +    +P+G PS CLLLKNMFDP+TETE DFD DIKEDV+EECSK+G++ HI+VDKNS GFVYL FE  +AA  AQRA+H RWFA KMI+A YM  + YEA
Sbjct:  326 GFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLD-DDDGGGLSLNAQSRALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEA 553

The following BLAST results are available for this feature:

BLAST of GT627386 vs. TrEMBL
BLAST of GT627386 vs. SwissProt
BLAST of GT627386 vs. TAIR peptide

BLAST of GT627386 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q9FT01_CICAR	4.014e-89	76.04	Putative splicing factor (Fragment) OS=Cicer ariet...	[more]
D7SWA2_VITVI	1.745e-84	72.52	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5AQI8_VITVI	2.520e-83	72.48	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9H6Q0_POPTR	1.096e-78	70.40	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7M284_ARALY	1.582e-77	71.75	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
B9HFS2_POPTR	2.699e-77	70.83	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
Q93Y25_ARATH	2.285e-76	69.96	Splicing factor-like protein OS=Arabidopsis thalia...	[more]
Q84WH4_ARATH	2.285e-76	69.96	Splicing factor-like protein OS=Arabidopsis thalia...	[more]
Q56XB8_ARATH	2.285e-76	69.96	Splicing factor-like protein OS=Arabidopsis thalia...	[more]
C0Z393_ARATH	2.285e-76	69.96	AT5G09880 protein OS=Arabidopsis thaliana GN=AT5G0...	[more]

BLAST of GT627386 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
RBM39_PONAB	2.547e-27	40.63	RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE...	[more]
RBM39_MOUSE	4.345e-27	39.82	RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE...	[more]
RBM39_HUMAN	4.345e-27	39.82	RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE...	[more]
RSD1_SCHPO	6.289e-18	32.08	RNA-binding protein rsd1 OS=Schizosaccharomyces po...	[more]
MAN1_HUMAN	1.075e-9	37.23	Inner nuclear membrane protein Man1 OS=Homo sapien...	[more]
MAN1_MOUSE	3.128e-9	36.17	Inner nuclear membrane protein Man1 OS=Mus musculu...	[more]

BLAST of GT627386 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT5G09880.1	1.609e-78	69.96	\| Symbols: \| Splicing factor, CC1-like \| chr5:308...	[more]
AT2G16940.2	5.024e-64	58.08	\| Symbols: \| Splicing factor, CC1-like \| chr2:734...	[more]
AT2G16940.3	5.024e-64	58.08	\| Symbols: \| Splicing factor, CC1-like \| chr2:734...	[more]
AT2G16940.1	5.024e-64	58.08	\| Symbols: \| Splicing factor, CC1-like \| chr2:734...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 151..201 score: 9.6
IPR000504	RNA recognition motif domain	SMART	SM00360	no description	coord: 129..206 score: 0.0
IPR006509	Splicing factor, CC1-like	PANTHER	PTHR10432:SF60	SPLICING FACTOR	coord: 1..216 score: 1.1
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 123..211 score: 4.5
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 1..216 score: 1.1
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 119..212 score: 2.3e-18coord: 1..42 score: 5.9
None	No IPR available	SEG	seg	seg	coord: 11..31 score
None	No IPR available	SEG	seg	seg	coord: 51..70 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT627386 ID=GT627386; Name=GT627386; organism=Lens culinaris; type=EST; length=649bp
GGGTTTTGGTTTTATTCAATTTGCCCACCTAGAGCATGCCAAGGCTGCCC
AGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGAACTATCAAGGTTTCA
TCTGTAGCAGACCATGTTGGAGGCCAAGACACAACAGCAAAATCTGCAGA
TTTTGATGATGATGAAGGCGGATTGGCTTTAAATGCCCAATCAAGAGCGT
TGCTTATGCAGAAGTTGGATCGCTCTGGAATTGCTGCAAGCATAGGCTTA
CCCATGAATGGGTCAGTTCCTGCCCAGCAGGCTATTAGCTTGCCTATTGG
TAATCCTGGATTAATGCCAGCACTAGCTCTACCAACTCAATTTATGCCTA
CCCAAGTGGCCGAACCTGTCGGAACCCCCAGCAACTGTTTGCTGTTGAAA
AATATGTTTGATCCAACCACTGAGACAGAGCCAGATTTTGATCTAGACAT
CAAAGAAGATGTGGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATA
TCTATGTCGACAAAAATAGTGCAGGTTTTGTGTATTTGATGTTTGAAACA
GTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGCGGTGGTTTGC
ACGCAAAATGATTTCAGCTATTTACATGCAACCTCAGGTATATGAAGCA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR006509	RBM39_SF
IPR012677	Nucleotide-bd_a/b_plait_sf

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